rs50696942 SNP Detail

Summary

• ID
  rs50696942
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48652342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATT CTATATTATA CCGTCGTGTG
  R
  CTGGTCCCTC AGGAACAAGT GATGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss133165799	ENSMUSSNP5005459	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321794340	CHEV_6_48625407	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50696942					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48652342 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	742 bp upstream
Gm46958	predicted gene, 46958	424 bp downstream
Rr629719	regulatory region 629719	134 bp distal
Rr629720	regulatory region 629720	240 bp proximal
Tssr56160	transcription start site region 56160	575 bp downstream
Tssr56161	transcription start site region 56161	199 bp downstream
Tssr56162	transcription start site region 56162	706 bp upstream
Tssr56163	transcription start site region 56163	752 bp upstream
Tssr56164	transcription start site region 56164	785 bp upstream
Tssr56165	transcription start site region 56165	1000 bp upstream