rs50697399 SNP Detail

Summary

• ID
  rs50697399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:122294875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA GCTGCCTGGA GGTCTTAGCC
  R
  GAGCTAAAGT CACGTAGAAT AGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147010197	ENSMUSSNP1852950	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss324857808	CHEV_14_122456685	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50697399					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:122294875 () rs orientation: forward

Symbol	Name	Function Class
Gm63354	predicted gene, 63354	271 bp downstream
Gm63496	predicted gene, 63496	186 bp downstream
Rr498317	regulatory region 498317	377 bp proximal
Rr498318	regulatory region 498318	591 bp proximal
Tssr127312	transcription start site region 127312	875 bp upstream
Tssr130315	transcription start site region 130315	599 bp downstream