rs50697492 SNP Detail

Summary

• ID
  rs50697492
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46037894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCAGTCATA AACGGGGCTC TGAACTGAAT AGCTCCACTC
  TGCCCAAGAT AGTCCCTTCT TCCCTGAGCT CTGGAGGGGC AGAGGGAGAT GTGACCTCTG
  Y
  GGGCAGCTTA CGTTATGCCC CTTGTGACTG TAGATCTTGG TTCTGCCTGA ACCTGTGCTG
  AGGGCCAGGG GGGCTGTTAC TCCTTGTGGG TCTGAGGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60259583	NES15753070	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	T	C	T	C		T	T	T	T		C
ss145695488	ENSMUSSNP554394	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
ss325403935	CHEV_17_45863917	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50697492					SNP	C	C	T	T	C	T	C	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259583	NES15753070	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46037894 () rs orientation: forward

Symbol	Name	Function Class
Gm35456	predicted gene, 35456	within coordinates
Rr331487	regulatory region 331487	within coordinates
Rr331488	regulatory region 331488	1907 bp proximal
Rr339881	regulatory region 339881	493 bp distal