rs50699336 SNP Detail

Summary

• ID
  rs50699336
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88202664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCGTTTT TGGTAAGGAC
  CCAACTAAGG AGCTCCCTCT AGGACATTCC CTGAGAGTCC CCAAGCTGGT CCAGCATCGG
  TACACATGGC TTGCTGTGGA CTATGATGAA GAAATAGCAG ACAAGAGCCA GGAGGTGGAA
  GAAACACTTC TCAGTTTATC TTCACACAGG AGGGGTAAGG GCAGAGGAGG AGGTCATCCC
  A
  TCACAGAGCA CACCGGCCTC CGGGCTCTCT GGCGCTGGGA TGCAGTCCCA CCAACACACT
  AGAGTAAAGC AGGAAGGCGG CAAACCTGAT GGCAAATACC TGAGTGTATT CCTTGTCTTC
  CTTCTTCATC AGCTTTCCTC CCCAAACTCT CAACCCTTAA GAAACAAAGG TGACAATTGA
  AGAAGCAATC TGAAATGCTC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	CBA/J	SJL/J
ss350399368	MGP_WTSI_1_90171517	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	CBA/J	SJL/J
rs50699336					SNP	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399368	MGP_WTSI_1_90171517	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88202664 () rs orientation: forward

Symbol	Name	Function Class
Cpgi540	CpG island 540	1938 bp proximal
Hjurp	Holliday junction recognition protein	within coordinates
Rr23451	regulatory region 23451	863 bp distal
Rr29783	regulatory region 29783	536 bp proximal
Tssr12871	transcription start site region 12871	803 bp upstream
Tssr12872	transcription start site region 12872	758 bp upstream