rs50699473 SNP Detail

Summary

• ID
  rs50699473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89337671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG GTACTCTGCT CTCTCCCAAC
  Y
  CTGAGTAACA CTATGGTTCT TGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133372173	ENSMUSSNP3713582	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321852054	CHEV_6_89310683	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50699473					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89337671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	568 bp proximal
Plxna1	plexin A1	within coordinates
Rr146639	regulatory region 146639	within coordinates
Tssr62008	transcription start site region 62008	1864 bp downstream
Tssr62009	transcription start site region 62009	1892 bp downstream