rs50699712 SNP Detail

Summary

• ID
  rs50699712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89813935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAAATCT TAGTTTTATG
  TGTGTATATC TGTGTGTGAG TGTATATGTA TGTTATAAAG TGTAAGATCA AGTCAAATCT
  GCTTGGTGAA GCCAAATTAA AAGAAACCCA TTCATTTTTC ATTGAGGAGC AAAAATTTAT
  AGACCTTTGA CCCAGTCAAT AGCTAAAATA TAAGGTTTCT GGTATCTTAA AAAGCAATAC
  Y
  GATGAGATTT TATGTTGTTG CGGCTGCTGC TGCTGAAGCA CTGTTCAGAG TAATTTACAT
  TACTTTACAA GGTTTTATTG AAAATATTTA AAAACTGTTT TGGTTGTTCC CTCAGCATAC
  ATATTGCTGT TTTATTGGAC GGTGCTTTTA TATTTCTTTC AAGATTGGCA CATATGAGAT
  ACACTTGTCC TAAATATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss61031656	NES16093382	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs50699712					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031656	NES16093382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89813935 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67720	transcription start site region 67720	1653 bp downstream
Tssr67721	transcription start site region 67721	1570 bp downstream
Tssr67722	transcription start site region 67722	632 bp downstream
Tssr67723	transcription start site region 67723	778 bp upstream
Tssr67724	transcription start site region 67724	1325 bp upstream
Tssr67725	transcription start site region 67725	1370 bp upstream
Tssr67726	transcription start site region 67726	1383 bp upstream
Tssr67727	transcription start site region 67727	1447 bp upstream