rs50699742 SNP Detail

Summary

• ID
  rs50699742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:23631020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAACAGAGT GGGATGGCGG AGGGCTGAGG CAGCGCTGCG
  CGTGCCCAAG CCAATGTTTG CCGAAGCCCT GCCAGCCGTG CTCCCCAGTC CAAGCCCCAC
  Y
  GACATTCCCC ATAGATGACA GCAGAGAAAG GCTTCTTCTT GGCTCCGGGG GACAGGAAGC
  CATGGCCTCT CCTCCTGGTG CCTCTGCTGG AGCCCTGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148849862	ENSMUSSNP2518808	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50699742					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23631020 () rs orientation: forward

Symbol	Name	Function Class
Ank1	ankyrin 1, erythroid	within coordinates
D8Rck1	DNA segment, Chr 8, Rockefeller University 1	361 bp proximal
Gm15816	predicted gene 15816	within coordinates
Mir486	microRNA 486	1551 bp upstream
Mir3107	microRNA 3107	1569 bp downstream
Rr186384	regulatory region 186384	619 bp distal
Rr186385	regulatory region 186385	1980 bp proximal
Tssr76615	transcription start site region 76615	1985 bp downstream
Tssr76616	transcription start site region 76616	1943 bp downstream
Tssr76617	transcription start site region 76617	1928 bp downstream
Tssr76618	transcription start site region 76618	1836 bp downstream
Tssr76619	transcription start site region 76619	963 bp downstream
Tssr76620	transcription start site region 76620	877 bp downstream
Tssr76621	transcription start site region 76621	836 bp downstream
Tssr76622	transcription start site region 76622	1975 bp upstream