rs50700624 SNP Detail

Summary

• ID
  rs50700624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43813824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATCTGCC AAGCCTCCTT
  GCCATAAAAA CCTATTGGAC CTTGCTCTCA CTGTCGCGGT GCAAACTTTG ACCGTGCTGT
  GGATACTGTG CCTCTTAGTA CGCGTAGTCT ACAAGAATGA ATGACACTTT TGTGGGCATG
  TACAAAGGAG CCTGCTCTAA AAGAGACTGG GAGAAAGTTT TAAAAATTCG CAGTGGAACA
  R
  ACATATGATA ACAAGCTATA CACAGTGCCC TCAGGACAGA AATATGAATA GTAATTAAGG
  CATGATAATA TTACACACTG CCAATCAAAG ATGAACTCAA ATTTTATGAG TTGTTACAAT
  CACAATCACG GCGGGTCACC AATGCATGGC TCACACCTTT TCTCTCTGCA TATCTTCTTT
  CTCTCTGCCT GTCTTCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62740064	NES17341072	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50700624					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62740064	NES17341072	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43813824 () rs orientation: forward

Symbol	Name	Function Class
Mep1a	meprin 1 alpha	121 bp upstream
Rr339847	regulatory region 339847	1423 bp distal
Rr339848	regulatory region 339848	623 bp distal
Rr339849	regulatory region 339849	223 bp distal
Tssr148121	transcription start site region 148121	194 bp upstream
Tssr148122	transcription start site region 148122	127 bp upstream
Tssr148123	transcription start site region 148123	1080 bp downstream
Tssr148124	transcription start site region 148124	1334 bp downstream
Tssr148125	transcription start site region 148125	1345 bp downstream
Tssr148126	transcription start site region 148126	1395 bp downstream