rs50700871 SNP Detail

Summary

• ID
  rs50700871
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34932906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGACCAC GCTGATCACA
  TGATCCTAGG AGAATTTCGT TTCACCATAA ACAGGCATCC AACAGGCAAG TACTCCAAAC
  CCCAGGACTG ATAGAGAGGA GCTAGAACTT AGCCCCAAGA AGACTCGAGA GTGCTTTCCA
  ATAAAGCCTT CAGTAACTGG ATGCAGCTGA ATAGACCTGA TGCCTTTGTA AAGTGTGGGA
  M
  TATCCCTCAC ATTTTCGTTG GCAGTGTCAA CCAAAAAAAA AAAAAAAAAA AAAAAAAACC
  AAGTTGCAAA GGGCAGGAAC TGATCAAAAC AAACAAACAA ACAAACAACA CACCCAGACC
  CGTAGGAGAA GCAGAAAGAA TTGCCTCCCG GACAAGCAAA TTGTCAACTT AACCGTAGTG
  GTCAAGTCGA AATCAGTATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148805373	ENSMUSSNP1900189	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50700871					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34932906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	1078 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	1868 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	1289 bp downstream
Rr645337	regulatory region 645337	96 bp distal
Rr645338	regulatory region 645338	274 bp proximal
Rr645339	regulatory region 645339	1150 bp proximal
Rr645340	regulatory region 645340	1212 bp proximal
Rr645341	regulatory region 645341	1879 bp proximal