rs50701364 SNP Detail

Summary

• ID
  rs50701364
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56301264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTGACA GTCTCATGTC
  AAGGCCAAAA AGGTAAAACA GAAACAGCCA TTTTGTATCT CTCCAGGAGC TACGCACTAC
  ACAGCAGTGC ACTGTAGTTC TTGCTTTCTC AATACAAGGT GCTTTTAGAT GAGGGCCCCC
  AGCAAAGTAA CGTCCGGAAG AAGCGGGGGT GCTTGAAATG AACCCATTTG CTTAACAAAA
  Y
  CTGAGGGATC AAGTTATTTC TTCTCCCACA CCATCTCGAT GTGCATCTGT TAATATAATA
  TCATGAGCTT TGACTGGAGT GTTGTAGCTC ATGCTAGAGC ATCCCGACAG TCCAGGATGG
  CCTAGGGTTT CCTTGGACCA TTGATGTACC TGCTCTACAA ATTCCCTTTC CTTTCTGTTA
  GCACACTGTT CTATTAGGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52437170	NES15406606	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50701364					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52437170	NES15406606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56301264 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	within coordinates
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	1864 bp distal
Rr267727	regulatory region 267727	1064 bp distal
Rr267728	regulatory region 267728	within coordinates
Rr269550	regulatory region 269550	1678 bp proximal
Tssr113509	transcription start site region 113509	1317 bp downstream
Tssr113510	transcription start site region 113510	1267 bp downstream
Tssr113511	transcription start site region 113511	1231 bp downstream
Tssr113512	transcription start site region 113512	1218 bp downstream