rs50703099 SNP Detail

Summary

• ID
  rs50703099
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85696384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTCCGTC AGCACCACCA
  CCTTCACCAC CGCCAGGCGG ATGTGGTTCT CAATGCTTGC ATGACTGTAC AGCCTGTTGG
  CGATGGAGGC CAGGGTCAGC AGGTAATGCT GCAGGCCCCG CCCATACATC CTGGCCATGG
  ACGAGTCAGC CACCAAGAGG AGCTCCACCT GGCGGGCCCT GGAGATGGAA CGGCGCCTAC
  K
  CCTCCACCAA GTCTGAGGTC CCGCGTTCCC AGATGGCGAG AAAGCTGAGT GGTCCAGCAG
  CTGCGGGGCC AGCGCTGAGC GTCTCCTAGA TCTACTGTGC ACCGAGGGGC TCTCTTGGGG
  CCCAGATGGG GATGCAGGAG TCTCGCAACT GGCGCGTGGC GGCAGGGCCT CGAAGCTAAA
  GCCCTCGCGG TTGTAGACAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60245685	NES15750913	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50703099					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60245685	NES15750913	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85696384 () rs orientation: forward

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	within coordinates
Cpgi8391	CpG island 8391	within coordinates
Cpgi8392	CpG island 8392	1135 bp proximal
Gm46558	predicted gene, 46558	15 bp upstream
Rr319329	regulatory region 319329	within coordinates
Rr325517	regulatory region 325517	within coordinates
Tssr141913	transcription start site region 141913	140 bp upstream
Tssr141914	transcription start site region 141914	734 bp downstream
Tssr141915	transcription start site region 141915	769 bp downstream
Tssr141916	transcription start site region 141916	798 bp downstream
Tssr141917	transcription start site region 141917	1107 bp downstream
Tssr141918	transcription start site region 141918	1185 bp downstream
Tssr141919	transcription start site region 141919	1223 bp downstream
Tssr141920	transcription start site region 141920	1560 bp downstream
Tssr141921	transcription start site region 141921	1622 bp downstream
Tssr141922	transcription start site region 141922	1851 bp downstream