rs50704282 SNP Detail

Summary

• ID
  rs50704282
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156058502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGGAAAC AAAGCTTTTA
  AGTAAACATT ATTCCAGCTG GAATGGCTTC CTGGACCTCT GGGGACTTTC TGGGGTGGGA
  AATGACTGTC AGCCGCAAAT CTGCTTCTGG GCTCCACCTC CCTGCTGGCG TCACTGGAGA
  CTGACGCCAA TGGCTTCATC GCTTTAATTC ATCTCCCCAG CTACTGCATG AGGGTCATAC
  M
  GAGGTTAGAG CAGATGTGCT TCTTGCTGCT CCTGCTTAGT ATTCGGGTTG CTTTTCTCTT
  GGGGGTTACC AAAGTAGGAA ATAACTGAGA GGGAGATTAT AGGATATAGA GGATTGTGGC
  TTGTGCAGAG AATTCTAAAT TTTATCAGAC ACAGGAGCCT TGCCTCACCA TAAGGTCCTT
  CTGTGTAGAA ATTATCCCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60330225	NES15828196	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50704282					SNP	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60330225	NES15828196	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156058502 () rs orientation: forward

Symbol	Name	Function Class
Rr421146	regulatory region 421146	1578 bp distal
Rr421147	regulatory region 421147	1042 bp distal
Rr421148	regulatory region 421148	1292 bp distal
Rr421149	regulatory region 421149	1172 bp distal
Rr421150	regulatory region 421150	within coordinates