rs50704848 SNP Detail

Summary

• ID
  rs50704848
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:35018047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAATGTCAC CTCCTCCTCG CAAATCATAG TCCTATGCAA
  GTCCGACTGC AGATAAGATT TGTATCTGTG CCGGGAAGTG ATAGCGCACG CCTTTAATCC
  C
  AACAGTCAGG AGGCAGAGGC AGGAGAATCT CTGAGTTCGA GGCCAGCTTG GTCTACAAAG
  AAAGTTTCAG GACAATGAAA GCTACACAAA AAAACCCTG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322156923	CHEV_7_36103641	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50704848					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:35018047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18869	CpG island 18869	18 bp distal
Gpatch1	G patch domain containing 1	182 bp upstream
Rr645358	regulatory region 645358	173 bp distal
Rr645359	regulatory region 645359	within coordinates
Rr645360	regulatory region 645360	1262 bp proximal
Tssr72030	transcription start site region 72030	185 bp upstream