rs50706299 SNP Detail

Summary

• ID
  rs50706299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121615237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATCCAGAA ACCCACCAGC CAGCTAGCCT GACAGACAGT
  AGAGGACAGA AAGGGGGAAA AGAAAAAATC CGTCCTGGCT CACACTAGGT AAACAAATGG
  Y
  AGGCACCAAT AGCCAAGGTT ATCCTCTGAC CTCCACATGT ACCCAAGGTT ATCCTCCGAC
  CTCCACATAC GTGCCATGGC AAGCAAATGT TCTCACACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135729813	ENSMUSSNP836347	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320906090	CHEV_3_121524506	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50706299					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121615237 () rs orientation: forward

Symbol	Name	Function Class
D3Mit347	DNA Segment, Chr 3 Massachusetts Institute of Technology 347	1477 bp proximal
Gm42776	predicted gene 42776	1856 bp downstream
Rr584177	regulatory region 584177	771 bp distal
Rr584178	regulatory region 584178	147 bp proximal