rs50707452 SNP Detail

Summary

• ID
  rs50707452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161574574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAC CAGGACAACG TGTGCTCTCC
  R
  GACTGCAGAT TCCACTCGTT TAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60335760	NES15843539	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		A		G	A	A	G		A
ss145921118	ENSMUSSNP4945518	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				G
ss320081469	CHEV_1_163677136	CHEVERUD	SCREENING_POP	f	SNP								A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50707452					SNP	A	A	A	A	A	G	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335760	NES15843539	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161574574 () rs orientation: forward

Symbol	Name	Function Class
Gm5049	predicted gene 5049	within coordinates
Gm70711	predicted gene, 70711	1360 bp upstream
Rr396465	regulatory region 396465	1219 bp upstream
Rr421832	regulatory region 421832	1177 bp proximal
Rr421833	regulatory region 421833	1761 bp proximal
Tssr9696	transcription start site region 9696	535 bp upstream