rs50707559 SNP Detail

Summary

• ID
  rs50707559
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136806057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGATTCCAA CTGATGGGCT GGCAAGTAAA TGCAAGCAGA
  GGAGGAAGAG AAAAACTTCC ATCTTCCAAT GTCTTATAGA TCTCCAGAAG AAGGTGTGGT
  C
  CAGATTAAAG GTGTGTACCG CCACGCCTGG ATCTGGGCCT TGTACTCAGA GATCTTACCT
  TACTCTCCTG GGGATACATA GCCACTATGC CTCAAGATT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133848595	ENSMUSSNP6687443	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50707559					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136806057 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	within coordinates
Cpgi18110	CpG island 18110	636 bp distal
Rr380176	regulatory region 380176	within coordinates
Rr640072	regulatory region 640072	837 bp distal
Rr640073	regulatory region 640073	206 bp distal
Rr640074	regulatory region 640074	within coordinates
Smco3	single-pass membrane protein with coiled-coil domains 3	872 bp downstream
Tssr2044	transcription start site region 2044	579 bp downstream
Tssr59337	transcription start site region 59337	1299 bp downstream
Tssr59338	transcription start site region 59338	1261 bp downstream
Tssr59339	transcription start site region 59339	1248 bp downstream
Tssr59340	transcription start site region 59340	1220 bp downstream
Tssr59341	transcription start site region 59341	603 bp downstream
Tssr59342	transcription start site region 59342	234 bp downstream
Tssr63836	transcription start site region 63836	1315 bp upstream
Tssr63837	transcription start site region 63837	1298 bp upstream
Tssr63838	transcription start site region 63838	1290 bp upstream
Tssr63839	transcription start site region 63839	1234 bp upstream
Tssr63840	transcription start site region 63840	997 bp upstream
Tssr63841	transcription start site region 63841	880 bp upstream
Tssr63842	transcription start site region 63842	862 bp upstream
Wbp11	WW domain binding protein 11	843 bp upstream