rs50707844 SNP Detail

Summary

• ID
  rs50707844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81478484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTCCCA GTGACTCAGT
  CATGGAGGAA AATGGGCTTG TTACTGGACA TCATCCGGGA AGTGTTCTTA CTGGTAGTTC
  TCCATCTGCT GTGCCTGACC AGGGCCTGGG TGGGAGCAGA CAAGTGTCTA AGTCTGCAGT
  CCTTCGGAAA TACTATACAT ATCTGCACAT TTGGATATAA ATGTATTTTC CAGGATTGAG
  Y
  ACTAGAGACA TTAATTATTT TAATAGCTTT GGATATAGGC CCCCGACTGG ACACCCTCAA
  GAGCGATTAA ACATTCCACA TTGTACATGC TTCTCTCTCA CGCTCTCTCA AGCTTCTCTT
  CCAAGCCTGG ATTGTGCTAT GCTGTCCGCT AGCCCGAGAC CCTTTCAAGC ATTCCCAGCC
  ACAGTGGGAC ATTTTTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63200765	NES17463309	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50707844					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63200765	NES17463309	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81478484 () rs orientation: forward

Symbol	Name	Function Class
Gm30288	predicted gene, 30288	within coordinates