rs50709135 SNP Detail

Summary

• ID
  rs50709135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAAGATAT GTTTTTTAAA TATTTATTTG TGTGTGTACT
  TTCATAGACA CCTACATGAG CTTATGTCTA CTATGTGTGT GCAGGTGTCT ACAGAGATCA
  R
  AAGAGGACAC CAGATCCCAG AACTGGAGTT CTAGGTAATT ATTGATTATA AGCAGCCATG
  TGGATGCTGG GTATTGACCC CAGGTCCATC TCCTGAAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147514399	ENSMUSSNP5861988	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320498589	CHEV_2_126760769	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50709135					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1629 bp distal
Gm75308	predicted gene, 75308	92 bp downstream
Rr373816	regulatory region 373816	1998 bp upstream
Rr564422	regulatory region 564422	1946 bp distal
Rr564423	regulatory region 564423	1957 bp distal
Rr564424	regulatory region 564424	1809 bp distal
Rr564425	regulatory region 564425	1308 bp distal
Sppl2a	signal peptide peptidase like 2A	1798 bp upstream
Tssr26085	transcription start site region 26085	1943 bp upstream
Tssr26086	transcription start site region 26086	1900 bp upstream
Tssr26087	transcription start site region 26087	1869 bp upstream
Tssr26088	transcription start site region 26088	1806 bp upstream
Tssr26089	transcription start site region 26089	1792 bp upstream
Tssr26090	transcription start site region 26090	1153 bp upstream