rs50709248 SNP Detail

Summary

• ID
  rs50709248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7353661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAGACTGG TAAGATTGTT TTCATATCTA ACCAATGTTA
  TGGCTGTGTG GTTAAAGTTG TTTGGTTGTC CGTTTGTCTG AAGATACTTG AACTGATGTA
  Y
  ATCAAATCCA TATGGCAGGA ACTTCAACTT GATTCTCAAG GTTTGGAGAG ATCTTAGACT
  TTTGAAGTAG AAAATTCTGT GACCCTGCTT ATGTTGACTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60680458	NES16229761	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50709248					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60680458	NES16229761	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7353661 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	115 bp downstream
Tssr83712	transcription start site region 83712	1676 bp downstream
Tssr83713	transcription start site region 83713	1275 bp downstream
Tssr83714	transcription start site region 83714	1091 bp downstream
Tssr83715	transcription start site region 83715	1047 bp downstream
Tssr83716	transcription start site region 83716	754 bp downstream
Tssr83717	transcription start site region 83717	743 bp downstream
Tssr83718	transcription start site region 83718	709 bp downstream
Tssr83719	transcription start site region 83719	676 bp downstream
Tssr83720	transcription start site region 83720	643 bp downstream
Tssr83721	transcription start site region 83721	412 bp downstream
Tssr83722	transcription start site region 83722	131 bp downstream
Tssr83723	transcription start site region 83723	84 bp downstream
Tssr83724	transcription start site region 83724	224 bp upstream
Tssr83725	transcription start site region 83725	348 bp upstream
Tssr83726	transcription start site region 83726	437 bp upstream
Tssr83727	transcription start site region 83727	1049 bp upstream
Tssr83728	transcription start site region 83728	1141 bp upstream
Tssr83729	transcription start site region 83729	1163 bp upstream
Tssr83730	transcription start site region 83730	1643 bp upstream
Tssr83731	transcription start site region 83731	1657 bp upstream
Tssr83732	transcription start site region 83732	1698 bp upstream
Tssr83733	transcription start site region 83733	1735 bp upstream
Tssr88067	transcription start site region 88067	648 bp upstream
Tssr88068	transcription start site region 88068	602 bp upstream
Tssr88069	transcription start site region 88069	156 bp upstream
Tssr88070	transcription start site region 88070	1090 bp downstream
Tssr88071	transcription start site region 88071	1754 bp downstream