rs50709969 SNP Detail

Summary

• ID
  rs50709969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:23630687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGAACTCA TCAAACTGGC AGCAGACCTC CACATGATAA
  GCTTGTGCTG CTTGGCGGAC ATTGCCCCAT GAGGCAATGG GAGAGAGCAG GACATGGCGC
  R
  TGCGCGCCTG TGCCACTCAC TAGGACCACT GTTCACATAA GGAATGATGG CCCCTGTCTG
  TCCTTGCCCC TCCCTAAAGG CCTAAGCCAT GGTTTATGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148849817	ENSMUSSNP1146963	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50709969					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:23630687 () rs orientation: forward

Symbol	Name	Function Class
Ank1	ankyrin 1, erythroid	within coordinates
D8Rck1	DNA segment, Chr 8, Rockefeller University 1	694 bp proximal
Gm15816	predicted gene 15816	within coordinates
Mir486	microRNA 486	1884 bp upstream
Mir3107	microRNA 3107	1902 bp downstream
Rr186384	regulatory region 186384	286 bp distal
Tssr76615	transcription start site region 76615	1652 bp downstream
Tssr76616	transcription start site region 76616	1610 bp downstream
Tssr76617	transcription start site region 76617	1595 bp downstream
Tssr76618	transcription start site region 76618	1503 bp downstream
Tssr76619	transcription start site region 76619	630 bp downstream
Tssr76620	transcription start site region 76620	544 bp downstream
Tssr76621	transcription start site region 76621	503 bp downstream