rs50711946 SNP Detail

Summary

• ID
  rs50711946
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77922423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGCTGGG ATTAAAGGTG
  TGCTCCATCA TGCTCAGCTT AAATATTTTG TTGTTGTTTG TTTGTTTGTC CATTTGAAGG
  TATCAAAAGT CAATCTCAGC TATCAACTGA AGCTGAGTAT GGTAGCCTAT GCCTATAAAT
  CCCACGGTCA GAAGGCTGAG GCAGGAGGAT TGTCAAAAGC TCGAGACCAG ACTGGACTGC
  T
  GTGCAAAGCC AAAAACAAAA AAAAACAAAA ATGAAAAGAT GCTGATTTGG TGGAGCTCTG
  TCCGACAGCA GCTTTCCCTT CAAATATCTG TTAGACCTTT GGAAATGTGG CAAAATCTGG
  TAAGGTGGCT TTGGTGGATG GCAGGAGAGT AAAGAAGTAA GAGATGAGTC TGGGGTGGAG
  GGAGAACTGT AGTACCCCTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136663662	ENSMUSSNP975982	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50711946					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77922423 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	1043 bp upstream
Gm39375	predicted gene, 39375	within coordinates
Gm69108	predicted gene, 69108	1218 bp upstream
Rr683457	regulatory region 683457	1084 bp distal