rs50712806 SNP Detail

Summary

• ID
  rs50712806
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54815347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA AAGGGCTTGT TCTACAGAAA
  C
  ATCGTGATAC TGTTCCTAGA GTGAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss139565762	ENSMUSSNP1837455	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324638268	CHEV_14_55196727	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50712806					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54815347 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	332 bp upstream
Cpgi6463	CpG island 6463	144 bp distal
Gm63340	predicted gene, 63340	within coordinates
Rr389677	regulatory region 389677	within coordinates
Rr404101	regulatory region 404101	265 bp upstream
Rr492273	regulatory region 492273	230 bp distal
Rr492274	regulatory region 492274	within coordinates
Rr492275	regulatory region 492275	467 bp proximal
Tssr128602	transcription start site region 128602	392 bp upstream
Tssr128603	transcription start site region 128603	351 bp upstream
Tssr128604	transcription start site region 128604	332 bp upstream
Tssr128605	transcription start site region 128605	313 bp upstream
Tssr128606	transcription start site region 128606	278 bp upstream