rs50712816 SNP Detail

Summary

• ID
  rs50712816
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141149966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG GTGAGTCTGG CCCCTGGCCC
  K
  CCCCAGGGTC CCCACCTTTG CTCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736064	ENSMUSSNP6651803	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50712816					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141149966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	815 bp distal
Gm70184	predicted gene, 70184	1596 bp upstream
Gm70191	predicted gene, 70191	1691 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40053	transcription start site region 40053	1857 bp downstream
Tssr40054	transcription start site region 40054	979 bp downstream
Tssr40055	transcription start site region 40055	966 bp downstream
Tssr40056	transcription start site region 40056	945 bp downstream
Tssr40057	transcription start site region 40057	884 bp downstream
Tssr40058	transcription start site region 40058	857 bp downstream
Tssr40059	transcription start site region 40059	833 bp downstream
Tssr40060	transcription start site region 40060	773 bp downstream
Tssr40061	transcription start site region 40061	763 bp downstream
Tssr40062	transcription start site region 40062	132 bp downstream
Tssr40063	transcription start site region 40063	1341 bp upstream
Tssr40064	transcription start site region 40064	1401 bp upstream
Tssr40065	transcription start site region 40065	1416 bp upstream
Tssr40066	transcription start site region 40066	1545 bp upstream
Tssr40067	transcription start site region 40067	1593 bp upstream
Tssr40068	transcription start site region 40068	1645 bp upstream
Tssr40069	transcription start site region 40069	1777 bp upstream
Tssr40070	transcription start site region 40070	1862 bp upstream
Tssr40071	transcription start site region 40071	1886 bp upstream
Tssr40072	transcription start site region 40072	1931 bp upstream
Tssr40073	transcription start site region 40073	1954 bp upstream
Tssr40074	transcription start site region 40074	1979 bp upstream
Tssr40075	transcription start site region 40075	1992 bp upstream
Tssr44314	transcription start site region 44314	16 bp upstream
Tssr44315	transcription start site region 44315	1379 bp downstream
Tssr44316	transcription start site region 44316	1462 bp downstream
Tssr44317	transcription start site region 44317	1520 bp downstream
Tssr44318	transcription start site region 44318	1903 bp downstream