rs50713915 SNP Detail

Summary

• ID
  rs50713915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123648172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGACCCAC CACTGCCTGT TACCCTGTCG TGCAGTTCCC
  TCTCCCAAGA GGCCTGGGAC TCTGATGTTG CCGGGGCTAT ATTACCCAGA AACTACAGGA
  Y
  ATGCTGGAGA CCAAGCTGAC TTTGGCTGTG GATTGAATGT CAGGTTTCAT GCTTATAAGG
  CATGCAACAC AGGACTATGG CTCTATTTCC CCTAAAAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60834169	NES16018850	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	C		C		C	T	C		T
ss149195312	ENSMUSSNP2922563	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T
ss321670958	CHEV_5_123960118	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50713915					SNP	T	T	T	T	C	C	T	C	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834169	NES16018850	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123648172 () rs orientation: forward

Symbol	Name	Function Class
B3gnt4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	351 bp upstream
Cpgi16587	CpG island 16587	1097 bp distal
Diablo	diablo, IAP-binding mitochondrial protein	within coordinates
Gm15751	predicted gene 15751	within coordinates
Gm49027	predicted gene, 49027	1973 bp downstream
Lrrc43	leucine rich repeat containing 43	1904 bp downstream
Rr620213	regulatory region 620213	1704 bp distal
Rr620214	regulatory region 620214	1963 bp distal
Rr620215	regulatory region 620215	720 bp distal
Tssr48799	transcription start site region 48799	1618 bp downstream