rs50713933 SNP Detail

Summary

• ID
  rs50713933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57488542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGATGG CTCAGCCAGT
  AAAGGTGCCA GCCACCAAGC CTGATGACCT GATTTTGATC CTGGGAAACC TGGATGGTGA
  GAGGAAAAAA ATGACGTCCT TCAAGTTATC CTCTGACCTC CATACATGCC GCACATCACA
  CACGCACGCA CACACACACA CACACACACA CACACACATG CCACAAACCC CCAGGTCTCA
  R
  CAGTCTGTCG GTTCTGCCTG CTAAGCATCG TCCCAGTCTG CTTCTAACTG CCTTAAGGTC
  AAAGATGGGA AGTGACACTA CCAAGCCATG TCTCCATACT GATGTGAGTG AAGAGGAGAG
  AGCCAGGAGG CCTAGAAGTC CTGGTTCACC ACGATTCCTC CCCTACATAA GGTCTGGCTG
  GCTAGTCTGG CAGTGTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62409675	NES17244600	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50713933					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62409675	NES17244600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57488542 () rs orientation: forward

Symbol	Name	Function Class
Tssr125867	transcription start site region 125867	963 bp downstream
Tssr128959	transcription start site region 128959	942 bp downstream