rs50713997 SNP Detail

Summary

• ID
  rs50713997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:20697047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAAGA TAGATTTGAC
  CATTCTCTAT TGGATACCTG ATTTTAAAAG ATCGTGGTAT ATAATAAATA TGTTTTGAAA
  ATGACAACTA TTTTTATTTT TTCTATTCTT GACATTATAA CTTAATTGCA TCGTTATCCC
  TTCCCTTTGC TTATGAATCT TATAAATAAT ACTTTGTGGA TCTCCTTTTT ATTTCTTGAT
  Y
  CATGGACTCA GTTCATAAAT AGCCAAGAAG GACAAAAACT TACACACACA CACACACACA
  CACACACACA CACACACACA CACATTCCCT CTCTCTCTAA CTATGGAATG CTTCGAAGTA
  GTCCACCCAA AATGGTTACC CACCCCCAAA TGAAAGTCTA CAAACAACTA AAATTACACA
  GCCTGAATAG CTTTTTAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60254529	NES15707712	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50713997					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60254529	NES15707712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:20697047 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr34	DNA Segment, Chr 17, Derry C. Roopenian 34	22 bp proximal
D17Jcs125	DNA segment, Chr 17, John C. Schimenti 125	within coordinates
Vmn2r108	vomeronasal 2, receptor 108	Intron