rs50714464 SNP Detail

Summary

• ID
  rs50714464
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:44143760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA TTTTAAGAGA TTAAGCTGAA
  A
  GCTAGGAAGA TGGAGAGAGG GTTCT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149020957	ENSMUSSNP1680363	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss319706026	CHEV_1_44161445	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50714464					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44143760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi223	CpG island 223	1834 bp distal
Gm29247	predicted gene 29247	within coordinates
Poglut2	protein O-glucosyltransferase 2	Noncoding-Transcript-Variant
Rr410461	regulatory region 410461	1669 bp distal