rs50714659 SNP Detail

Summary

• ID
  rs50714659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134685036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCGCTC TCTCTTCTTG
  CTTGCTCCGT TGGAGCTCTC AGACACACAC ACGAGGATGC AAGCCCCGCG TGGGGAGCAC
  AGAATTGATT TTATTGTTCT GAGTTTGGGT TCATTCCTGT CATGATCACT GGGCCGAGGC
  AAGGAGACCT TGCCTCTTTC AGTCTTGGTC CCGCGGGGGT CTGCTCAAAT TCTCTTCCAT
  R
  TTCAAAGTGC ACTGGGAAAG CTTCACAGTT TAATATGCCC TAGATGGTCA ACTGAAGCGG
  AGTGAAGACA TGGCCCTCCC ACCCCCACCC ACCTAAACCA AAACAAAACA ACAAAACAAA
  ACCATCCCCC TAAACCCCCA GCAGCTGCTG CTGCAGCCGT TATGAAAAAA TAATACAAAC
  TCTTCTTAAA AAATAGATCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60845239	NES16004316	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50714659					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60845239	NES16004316	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134685036 () rs orientation: forward

Symbol	Name	Function Class
Limk1	LIM domain kinase 1	within coordinates
Tssr53665	transcription start site region 53665	1351 bp downstream