rs50716001 SNP Detail

Summary

• ID
  rs50716001
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172154613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAA CAATCTGTAA TGGGATCTTA
  K
  GCCCTCTTCT GATGTGTCTG AAGAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009194	PARCsnp_1.18675	PARC_SEQ	INBRED	f	SNP			G	T
ss120012394	PARCsnp_1.08464	PARC_SEQ	INBRED	f	SNP			G	T
ss146188015	ENSMUSSNP3420510	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320124231	CHEV_1_174257177	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50716001					SNP	T	T	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172154613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	91 bp distal
Gm70847	predicted gene, 70847	120 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	1666 bp distal
Rr423526	regulatory region 423526	1930 bp distal
Rr423527	regulatory region 423527	756 bp distal
Rr423528	regulatory region 423528	1128 bp distal
Rr423529	regulatory region 423529	713 bp distal
Rr423530	regulatory region 423530	186 bp distal
Rr423531	regulatory region 423531	1172 bp proximal
Tssr15210	transcription start site region 15210	821 bp upstream
Tssr15211	transcription start site region 15211	808 bp upstream
Tssr15212	transcription start site region 15212	791 bp upstream