rs50717345 SNP Detail

Summary

• ID
  rs50717345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143611277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGCATTA TTTGGCATAT
  CATTAGAGTA TAGGAGAGCC TTTAATCTAC ATCTGGGACC CCTGTTTCAG CTTTCTTAGA
  AGATTAAAAA AAAAAAAAAG CTAAATTTAT TCAAATAGAC CAAAAGTGAT TGGAAAGATT
  TTCTTTATTG TTACTGTGTT GATCAGGCAA AAAGGACTTC AGAAATTGTA GTTTTTATAA
  Y
  TGAACTTTTT GTCCAGGCTT GAATTATTTG TTCTTTGCCG TGTGCGATAA GGAAAGGATG
  GCGCAGGAAT GGCTGGAGGG CGGTTACCAG GAGGAACGAG TGGGGGTACA AGATTACAGG
  AACACATTGT TCCTTGTAGT GTGTGCAGAG TGTAGTTAAG GTGTTTTCCC TTCCAGAGTA
  TCTAGCACAG TTCTTGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852257	NES15998534	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50717345					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852257	NES15998534	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143611277 () rs orientation: forward

Symbol	Name	Function Class
Cyth3	cytohesin 3	within coordinates
Rr111093	regulatory region 111093	1924 bp proximal
Rr124733	regulatory region 124733	676 bp distal
Rr124734	regulatory region 124734	within coordinates