rs50719256 SNP Detail

Summary

• ID
  rs50719256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53616010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGATTT CTGTGAGTTT
  AACAGTGAGG GGGCTGGACG GGAATGGACA GCAGCTACAG GTCCTCTAAC ATTAGGCAGG
  GGACCTAGGG CTTCAGTCAC GGGGCTAGAT CTTCCCAGCT CAGTTCGTGC CTCGGCCTCC
  CTGGGAAAAA TGAACCCAAT CGCGCATGCT TACTTCGCGA AGCAGCCAGC AGGAGATAGG
  Y
  ACCTGAATGC TGGCCAAGTT ACCTGGCCAC CGCGAGGGAG GAAGAGGCAA ATCGCCGGCC
  TCTGGGAGGC ACTGTTGTCT CGTGCTTTCC CTCCAGCAGC GGTGGCTTGG AGGGGTGGCA
  AGGTTTCACC CTAGTTGGAC TGTCTTGACC ACCTCAGGCA CACTAACGCT CGACCCAAAC
  CTGATTCCCT TAAAGGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61805364	NES17736119	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs50719256					SNP	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805364	NES17736119	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53616010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	within coordinates
Gm33763	predicted gene, 33763	95 bp upstream
Rr388456	regulatory region 388456	within coordinates
Rr406701	regulatory region 406701	1230 bp proximal
Rr480050	regulatory region 480050	within coordinates
Rr480051	regulatory region 480051	55 bp proximal
Rr480052	regulatory region 480052	148 bp proximal