rs50722343 SNP Detail

Summary

• ID
  rs50722343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129473129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT CTGTATTGCT CTCAGCAACA
  R
  GAGCAGGGCT GGGATTCCGC TCAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147442992	ENSMUSSNP5867974	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321314009	CHEV_4_129256580	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50722343					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129473129 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	787 bp upstream
Rr600283	regulatory region 600283	482 bp distal
Rr600284	regulatory region 600284	508 bp proximal
Rr600285	regulatory region 600285	1492 bp proximal
Tssr43532	transcription start site region 43532	819 bp upstream
Tssr43533	transcription start site region 43533	804 bp upstream
Tssr43534	transcription start site region 43534	776 bp upstream