rs50724097 SNP Detail

Summary

• ID
  rs50724097
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89280710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCTTCC CTCACCAAAC
  AGCTACTTTT TTATTTTTAT TTATTTATTT ATTATTGCAC AAAGACATTT CAGGACCTGA
  TAACAAAGGG ATCTGCAGGC AAAGGCCCTA GCCCAGTGAA GCCAGTATCA TAAGGGGGAG
  GCAGGCAATA TACCACAATA GCAATGAACT AGTAGATGAC TTGTTCATTT ATACCTAGGG
  R
  AAAACCCTTT TCTTATGCAT CCCCTGGGGA TGGTCAGCAC TGAAGGGAAT GACTAGAATA
  ATGGCTTCCA AGTTGACATA TTAGGGGCAA CCTCAGAGAC GAGATGTGGC AGTTGTTTAG
  AAGATTGGAA TATGATGTTC CCAGTAAAAG TGTTAGCAGA GGCAAAAGCC CTGAGATGGA
  GGTGAGTAAG ACAGGGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61033132	NES16094193	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50724097					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61033132	NES16094193	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89280710 () rs orientation: forward

Symbol	Name	Function Class
A230065N10Rik	RIKEN cDNA A230065N10 gene	595 bp downstream
Cpgi19393	CpG island 19393	1109 bp proximal
Me3	malic enzyme 3, NADP(+)-dependent, mitochondrial	782 bp upstream
Rr650822	regulatory region 650822	743 bp proximal
Rr650823	regulatory region 650823	1612 bp proximal
Tssr67672	transcription start site region 67672	903 bp upstream
Tssr67673	transcription start site region 67673	915 bp upstream
Tssr67674	transcription start site region 67674	981 bp upstream
Tssr67675	transcription start site region 67675	997 bp upstream
Tssr67676	transcription start site region 67676	1054 bp upstream
Tssr67677	transcription start site region 67677	1187 bp upstream
Tssr67678	transcription start site region 67678	1373 bp upstream
Tssr67679	transcription start site region 67679	1449 bp upstream
Tssr67680	transcription start site region 67680	1503 bp upstream