rs50725115 SNP Detail

Summary

• ID
  rs50725115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45291066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC AGGCTGCCTG CCCACCCGCC
  Y
  GGCCCGGGGA ACGTAAAGGG GCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149139899	ENSMUSSNP4387913	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50725115					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45291066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19075	CpG island 19075	1789 bp distal
Cpgi19076	CpG island 19076	1396 bp proximal
Mamstr	MEF2 activating motif and SAP domain containing transcriptional regulator	within coordinates
Rr646529	regulatory region 646529	1639 bp distal
Rr646530	regulatory region 646530	1133 bp distal
Tssr2250	transcription start site region 2250	1735 bp downstream
Tssr66600	transcription start site region 66600	1745 bp downstream
Tssr66601	transcription start site region 66601	1630 bp downstream
Tssr66602	transcription start site region 66602	1203 bp downstream
Tssr66603	transcription start site region 66603	97 bp upstream