rs50725536 SNP Detail

Summary

• ID
  rs50725536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127293542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTAGGGAA AATCGCCATC
  CAAGTACCTC TTTAGTGATG TCCCACTGAG ATGGAAATTT CATTTGTTTG TTTTTAATAG
  CAGCAAGAGC TGGAATGTAG CTCAGTATAT CACATATTTG CTTGCTATGA ATGAAGCCTT
  GGGTGCGATC CCCAGCTATG GATAAACTAG GCGTGGCTGT GCATGTCTGC CGTCCCAGTA
  Y
  TTGGGAGGCA GAGATGGAAA AATCAGAAGT TCAAGGTCAT CTTTGGCTCT ACAGTGAGTT
  CGAGGCCAGC TTGTGGTACA TGGGACCATG TATAAACAAA CAAACAAACA AATAAATAAA
  TAAAATCTAG CAAAATGACT TTCATGAGAC GAGTTGTCCT CTCTCCTGCC ATTTATTTTC
  CATTTCCTAT GAATCTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135865122	ENSMUSSNP5107205	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320954696	CHEV_3_127202811	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50725536					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127293542 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	mRNA-UTR
Cpgi13791	CpG island 13791	484 bp distal
Rr584800	regulatory region 584800	402 bp distal
Tssr35576	transcription start site region 35576	855 bp upstream
Tssr35577	transcription start site region 35577	822 bp upstream
Tssr35578	transcription start site region 35578	800 bp upstream
Tssr35579	transcription start site region 35579	756 bp upstream