rs50725939 SNP Detail

Summary

• ID
  rs50725939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121420321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG GACTGCTCTA TATTCTAGAC
  Y
  GCCCTGGGCT ACAGAGTGAG TTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149182200	ENSMUSSNP4191323	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50725939					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121420321 () rs orientation: forward

Symbol	Name	Function Class
Gm73432	predicted gene, 73432	within coordinates
Hectd4	HECT domain E3 ubiquitin protein ligase 4	within coordinates
Rr108884	regulatory region 108884	280 bp proximal
Tssr48564	transcription start site region 48564	1399 bp upstream
Tssr48565	transcription start site region 48565	1419 bp upstream