rs50726242 SNP Detail

Summary

• ID
  rs50726242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121946833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG GGCATAGCAA CATTGTCTTA
  R
  CTACTCAGAA GGCCGAGGAA GGGTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147409292	ENSMUSSNP1821268	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320487079	CHEV_2_121942088	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50726242					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121946833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12168	CpG island 12168	1605 bp proximal
Rr55508	regulatory region 55508	967 bp proximal
Rr58060	regulatory region 58060	within coordinates
Rr373779	regulatory region 373779	1044 bp upstream
Spg11	SPG11, spatacsin vesicle trafficking associated	within coordinates
Tssr19802	transcription start site region 19802	572 bp upstream
Tssr25950	transcription start site region 25950	1965 bp downstream