rs50726364 SNP Detail

Summary

• ID
  rs50726364
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:79178164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGTGGG CATCGAGAAG
  CGAGCATCTG CGGCCTCCAG GACGACGGAG AGTGGGCATT TCCAGCTTTG GGGTGATGAC
  AGGAAGGAAA AGAGAGAGGA TTCCATGGAG GAGCTGGAGA AGGCAAAACC GGGATCGTTG
  AGAAATTGTC GGAGAGGAGG TTAGAGACGG TGACCGGGGA TTAAGGCAGG CTTCAGGTTC
  W
  ATTCTTGCAG AAAGAGCATT AACCTGGAAA GAAATTGATG TCGGTCTCTG CAACTGCGGG
  AGGGACGAAG GGGCTTTGTT CTGCCTTCAA TGAAAGGAAC CTGCTGTCGC GGAGGGCGCA
  CTCACTGATG GGGAAGCTAG GTGCCGCGTT CTGCCAGATA CAGGTACCGG ATCAAAGCTC
  ACTGAGCCCT TTCCTGATCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61653369	NES17602670	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50726364					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61653369	NES17602670	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79178164 () rs orientation: forward

Symbol	Name	Function Class
Arg2	arginase type II	within coordinates
Cpgi4801	CpG island 4801	within coordinates
Tssr3873	transcription start site region 3873	601 bp downstream
Tssr114077	transcription start site region 114077	574 bp downstream
Tssr114078	transcription start site region 114078	974 bp upstream
Tssr116820	transcription start site region 116820	778 bp downstream
Tssr116821	transcription start site region 116821	803 bp downstream