rs50726373 SNP Detail

Summary

• ID
  rs50726373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73188784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTGTTCC CTAAACACTA
  TTTTTTCAAA AATTAATTCT CTACAGTGTC AACCTACTGG ATGACACAGG AACACCTAGC
  TACACAAGGG CAACATAAAT TTCAACTCCG GAGAAATATC ATCACACAAA ACACAAACAT
  TCTTTAAACT TTACAATCTT TAAAGGAAGT GATGTCATAA CTGTATACAT GCATTAATAA
  Y
  GTATATAACT TAAGAGTAAC AGTAATTTAA AAGTAACTCC ATCTTCAACA AGTCTGGAGT
  ATTCTGGACA TTCATCAAAT ATATGATTTA AAGTATACTT GGCAAAAACA GTAAAAACCT
  GCTTCTTGTT TTGACTAAAG GAATTAAATG CATCACAATG CCCAAGTTAT TACCCAAATA
  ATACTAAGTT TATTCAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss61020025	NES16105287	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs50726373					SNP	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020025	NES16105287	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73188784 () rs orientation: forward

Symbol	Name	Function Class
Chaserr	CHD2 adjacent suppressive regulatory RNA	762 bp downstream
Chd2	chromodomain helicase DNA binding protein 2	within coordinates
Cpgi19266	CpG island 19266	878 bp distal
Gm44686	predicted gene 44686	within coordinates
Rr167999	regulatory region 167999	within coordinates
Rr380950	regulatory region 380950	322 bp downstream
Tssr67202	transcription start site region 67202	1066 bp downstream
Tssr67203	transcription start site region 67203	978 bp downstream
Tssr67204	transcription start site region 67204	944 bp downstream
Tssr67205	transcription start site region 67205	328 bp upstream
Tssr72947	transcription start site region 72947	1270 bp upstream
Tssr72948	transcription start site region 72948	224 bp downstream
Tssr72949	transcription start site region 72949	1852 bp downstream