rs50726401 SNP Detail

Summary

• ID
  rs50726401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55254356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAAAAGTCAC AGCCCTCATC GCCACTGTCG GGCTCCTCAC
  CCCCTTCACT TGGTTTCTTA ATGACCCCCT CCCTCATCTT TAGACAGCAC CATGACGATG
  Y
  TTTCTCTGCC TCTTGGAGAA CTGTTGGAAA CGCTCAGTTC AGTGGTGTTC AGCAACAGCG
  TTTCAGATCA TTTTTTAGGC GGCATTATCT AGTATTTATC C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52722738	NES15566707	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C	T	T	C	T	T	C	C	T
ss139575879	ENSMUSSNP2778339	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50726401					SNP	C	C	C	C	C	T	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52722738	NES15566707	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55254356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	805 bp distal
Gm63347	predicted gene, 63347	1098 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369830	regulatory region 369830	1705 bp downstream
Rr369831	regulatory region 369831	1276 bp downstream
Rr492392	regulatory region 492392	1435 bp distal
Rr492393	regulatory region 492393	1732 bp distal
Rr492394	regulatory region 492394	1109 bp distal
Rr492395	regulatory region 492395	617 bp distal
Rr492396	regulatory region 492396	720 bp distal
Tssr125743	transcription start site region 125743	1328 bp downstream