rs50727875 SNP Detail

Summary

• ID
  rs50727875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53616535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTGAGGCG GGGTCGAGGG
  TACCTGGTCG GCTGGGATCT CTTGGGCTAG TGGAGCGGGC CAGGCCCGGT GTCAGTGCAC
  ATTTATTGAT GGCAGGTATT TGGGGAGTAA TTGAGCGCGG CGGCGAGCCG GGGGCGAGAA
  TGGGCCTCCA CGAGCAATTA AATGTGATTA GGCTGAGACC TTCGGGATCC AGCTGGGTGA
  Y
  TGATAACCCG ACTGCATTCC TGCCCGGCTC GCGACTTCAA ACGGGCGGCT GGCTGAGGGA
  GGGACGGGAG GGGCCTCGCG CTCGGACTCT GTCCTTCTGC CCGGAGTCGT GGCCCCTTCC
  CGCGCCCCGG TCGGTCCGAG GCTAGCTAGC CAGGTGCAGA CCGAGAGAGA GCGCAGTGCC
  GAGCCACCCT GCGCTGAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61805362	NES17736087	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs50727875					SNP	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805362	NES17736087	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53616535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5621	CpG island 5621	within coordinates
Gm33763	predicted gene, 33763	within coordinates
Rr388456	regulatory region 388456	within coordinates
Rr406701	regulatory region 406701	705 bp proximal
Rr480050	regulatory region 480050	378 bp distal
Rr480051	regulatory region 480051	449 bp distal
Rr480052	regulatory region 480052	within coordinates
Rr480053	regulatory region 480053	1857 bp proximal