rs50728190 SNP Detail

Summary

• ID
  rs50728190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67740673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTAGTCA ACTTTAGGCA
  AGTGGGGGGG GGAGGTTCTG TTTGGGGCAT GTCCTGTGTG TGTTTTGCAT ACAGAACATA
  CAGGTAATGT GCTATAAAGT TGTCACAGAA ACCTTAGGAA ATTTGGATTA TCCATGTTTT
  ATAAACAAAC ACCTCCCCCC AGCACTTCAG ATGTTAAATA ACTTACCCAT TGTCACTAAG
  R
  AAGGAAATGA AAGGAATGCC CATTAATGAG TAGTAAATGC ATTATTAGGG GAGTAATATA
  TATTGTTACG CAACGTGAAT GGAACATAGC AAATGTTAAA GACACAAGCA GTGAGTTCTG
  CTGTTCTAGT GTTCTGTGGC ATCAGTTTGG TTACTTTCAA TGAGAGTGGG AACAGTGGCA
  GAAATTAAGA ACACTGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136586208	ENSMUSSNP3495251	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss322992781	CHEV_9_67681198	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50728190					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67740673 () rs orientation: forward

Symbol	Name	Function Class
C2cd4a	C2 calcium-dependent domain containing 4A	1061 bp upstream
Cpgi21983	CpG island 21983	1503 bp distal
Rr681990	regulatory region 681990	1950 bp distal
Rr681991	regulatory region 681991	707 bp distal
Rr681992	regulatory region 681992	703 bp proximal
Tssr90357	transcription start site region 90357	1060 bp upstream