rs50728320 SNP Detail

Summary

• ID
  rs50728320
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:119982228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAACCCTGA GGGTTGGAGA GCCTGGAACC TGAGTTCCCA
  GCAAGGGCCT GAAGGTATAA ACTGCAGGAT GGAAGAGGTC AGAGGTCAGT GGTCAGCAGG
  M
  TGTTCCCTAA AGAGTGGCAG GAGGAAATGG GTGAGACTTG TCAGGAGGCA TTCACCTCAG
  TTTTTGAGGC AGAGTCTCTC ACAGGATCTA GAGCTCATAC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60789418	NES16432295	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs50728320					SNP	A	A	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60789418	NES16432295	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:119982228 () rs orientation: forward

Symbol	Name	Function Class
Gm41936	predicted gene, 41936	1761 bp upstream
Rr30107	regulatory region 30107	374 bp proximal
Rr371936	regulatory region 371936	within coordinates
Sctr	secretin receptor	within coordinates
Tssr8396	transcription start site region 8396	735 bp upstream
Tssr8397	transcription start site region 8397	751 bp upstream