rs50728994 SNP Detail

Summary

• ID
  rs50728994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26491910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT GCAGTCTTCA TAGTCTTAAG
  R
  ATATGTTTCA CTGAATCATC ACTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52328635	NES15372167	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A	G	G	A	G	A	A	A	G	G
ss137438949	ENSMUSSNP6910314	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50728994					SNP	A	A	A	G	A	A	A	G	G	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328635	NES15372167	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26491910 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	798 bp distal
Rsad2	radical S-adenosyl methionine domain containing 2	835 bp downstream
Tssr112998	transcription start site region 112998	1830 bp upstream
Tssr112999	transcription start site region 112999	1877 bp upstream
Tssr115902	transcription start site region 115902	946 bp downstream
Tssr115903	transcription start site region 115903	1278 bp downstream
Tssr115904	transcription start site region 115904	1295 bp downstream
Tssr115905	transcription start site region 115905	1600 bp downstream
Tssr115906	transcription start site region 115906	1728 bp downstream
Tssr115907	transcription start site region 115907	1783 bp downstream
Tssr115908	transcription start site region 115908	1823 bp downstream
Tssr115909	transcription start site region 115909	1909 bp downstream
Tssr115910	transcription start site region 115910	1961 bp downstream