rs50729031 SNP Detail

Summary

• ID
  rs50729031
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116696274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGATACA TGCTTACCGT
  CTCTCTAGAA AAGGTAGCCT GCTTGGGAAG CACTGCTGCG AGGCTGGAGA GGTGGGGTGG
  GTGGTACAAG CACAAAGATC TGAGTTTGAG TCTCCAGCAT CCACATAACG AGGCAGGCAT
  GGCCATACGT GTCAGTAACC TGTGCTGTGT GGGAAGGGAT TCAGGGAGGT TGCTGGGATC
  K
  TCTGGCTGCC AGCCCAGCTT GAAGTTCAGT GAGAGTCCAT GACTGAAGGA AATAAGACAG
  AGTCCCCATG TGTGCCTGTG AGCTCGCACA TGGCACAAGT GCAAATACAC GCATTACACA
  CCCACATGTG CATATGCACA CACATGCCCC CAAGGTTCAG AAAGTTTGCA ACATTTAGTA
  GCTTGAAATG GCCAAATCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135674971	ENSMUSSNP2180975	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50729031					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116696274 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			Intron
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			1464 bp proximal
Rr583801	regulatory region 583801			1495 bp proximal
Rr583802	regulatory region 583802			1736 bp proximal
Tssr31391	transcription start site region 31391			952 bp upstream
Tssr31392	transcription start site region 31392			1038 bp upstream
Tssr31393	transcription start site region 31393			1072 bp upstream
Tssr31394	transcription start site region 31394			1094 bp upstream
Tssr31395	transcription start site region 31395			1739 bp upstream