rs50729100 SNP Detail

Summary

• ID
  rs50729100
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123505566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAATGCTA GGTTCACAGC
  CTCCCTGACT GGGATCTGTC CGTGCCAGCC CAGGTAACCC TCACAGCCCC TGGAAAGGGT
  TGGGTGGCTG TCGTCAACCT TGTCTATATA GGGGAGGCTG AGATCTCGGA CAGAAAATAC
  TGGTCCGGTG ATTCACCAGG CGGAAATCTG ACTCCAAACT GATTCCCTCT GCATCCTCAG
  W
  TGTGGATTGT AAGAAAGCCC AGCACAGAAA CTCTGACCAA CCGCGTAAAG GCGGGTTGCT
  GGTCTGGGTA CAGTAGCAGA ACACCCGAAG CGTCTTGAAG CTCCTACCCG CCCTGTGAGT
  AGCTAGCTGT CTGTAGCCCG CCTGCCTCAG GTTCTAGACA GCTGCTGGCT GTGTGCCCAT
  ATCATTTATA TAGTTTTTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60834528	NES16021096	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50729100					SNP	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60834528	NES16021096	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123505566 () rs orientation: forward

Symbol	Name	Function Class
5830487J09Rik	RIKEN cDNA 5830487J09 gene	within coordinates
Bcl7a	B cell CLL/lymphoma 7A	within coordinates
Rr620179	regulatory region 620179	1128 bp proximal
Rr620180	regulatory region 620180	1261 bp proximal
Rr620181	regulatory region 620181	1536 bp proximal