rs50731189 SNP Detail

Summary

• ID
  rs50731189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85918839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAC TCAAGCCCTA TTCCAGAGCA
  Y
  AATTTCCCAG GCAAAGGATG AAAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62953720	NES17409444	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T		C	T	C	C		C
ss325486745	CHEV_17_86010751	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50731189					SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62953720	NES17409444	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85918839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9587	CpG island 9587	1245 bp proximal
Gm55781	predicted gene, 55781	265 bp upstream
Gm55782	predicted gene, 55782	1971 bp upstream
Rr340289	regulatory region 340289	1838 bp distal
Rr340290	regulatory region 340290	438 bp distal
Rr340291	regulatory region 340291	161 bp proximal
Six3os1	SIX homeobox 3, opposite strand 1	within coordinates
Tssr146084	transcription start site region 146084	1815 bp upstream
Tssr149705	transcription start site region 149705	920 bp downstream
Tssr149706	transcription start site region 149706	1643 bp downstream