rs50731446 SNP Detail

Summary

• ID
  rs50731446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25424643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGGACT GTGAGCAGGC
  AAGGCACAGA TGTCTTAGAT GTGTTCAGCT CCATGTAACT GTTCAACAAA TTAGAAAGGT
  GTTCAGGAAC AATGCTAAGC AGCAGTAAAC AGCTGCAAGC TAGTCAGATT ATAGTCCAAC
  AGGCTGGGCC AAGTGGCCTC TCTTGAGCCA TTGTACAACT GTTTCTTGAA TCTGTACCCT
  Y
  ATCAAACCAA AAGCAGGCTC CACAGAGACC CTTCCTGAGT TGCTTATCTA CATGAAGGTT
  GTTAATTTGG TGTCATGAGG TCACAACATC CTTGGTCACT GAAGGGTCTA GAACATGTCT
  GATACACAGT TTTAAAGATG TGTTTGAAAG ACATATTTTT ATTTGGCATG TGTATGAAGG
  GATTGCATAC TGTAGAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60979894	NES16139978	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50731446					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60979894	NES16139978	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25424643 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpul1	heterogeneous nuclear ribonucleoprotein U-like 1	within coordinates
Rr155557	regulatory region 155557	1643 bp distal
Rr155558	regulatory region 155558	1958 bp proximal
Tssr71296	transcription start site region 71296	383 bp upstream
Tssr71297	transcription start site region 71297	796 bp downstream