rs50731711 SNP Detail

Summary

• ID
  rs50731711
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138232478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTTCCCCA AACGAGTGAG AGGGTACCGT GGGGCAAGCC
  CGCCCACCCG CTTGGGCAGC GATGGTAGCA AGGGACCACC CGCGTTAGTG GACCGGGGAC
  G
  GGGGAGACGC AGACCACATC AACGACTCTC CATCGCCGCC TCTTTCAGAA ACCAAGAGAA
  AATGGTGGGA GGCGAAAAGA AAAACTAAAT AAAAAGCAA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss135953849	ENSMUSSNP5478870	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs50731711					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138232478 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13876	CpG island 13876			within coordinates
Eif4e	eukaryotic translation initiation factor 4E			Intron
				mRNA-UTR
Gm64814	predicted gene, 64814			469 bp upstream
Mir1956	microRNA 1956			232 bp downstream
Rr398072	regulatory region 398072			211 bp upstream
Rr586156	regulatory region 586156			528 bp distal
Rr586157	regulatory region 586157			within coordinates
Rr586158	regulatory region 586158			78 bp proximal
Rr586159	regulatory region 586159			187 bp proximal
Rr586160	regulatory region 586160			590 bp proximal
Rr586161	regulatory region 586161			927 bp proximal
Tssr31989	transcription start site region 31989			539 bp downstream
Tssr31990	transcription start site region 31990			281 bp downstream
Tssr31991	transcription start site region 31991			259 bp downstream
Tssr31992	transcription start site region 31992			196 bp downstream
Tssr31993	transcription start site region 31993			166 bp downstream
Tssr31994	transcription start site region 31994			135 bp downstream
Tssr31995	transcription start site region 31995			86 bp downstream
Tssr31996	transcription start site region 31996			527 bp upstream
Tssr31997	transcription start site region 31997			1877 bp upstream
Tssr35898	transcription start site region 35898			463 bp upstream
Tssr35899	transcription start site region 35899			226 bp downstream
Tssr35900	transcription start site region 35900			250 bp downstream