rs50732235 SNP Detail

Summary

• ID
  rs50732235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:79040958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGAATGAC AAATGCTCAG
  TGTCTGGAGG CAGAAATGGT GCTTAACGGA GGCCAAAGAG GCCAGGGCCA GGCTGAGTCT
  GTGGAATATC TTCCTTAATG GACATAAAGA TGAGTACACA GCACAGAAGA GGGTGCTTAG
  GGGTATTGAT AGAAAATGCC ACATCGTGAG GAACCGTGGC AGGCAGGATG TAGGGACAGA
  R
  AAGGGAGCAG CTTGGAGAAC TCCCGACGAC GGGTTAAAAC GTGAGAGCTA GAAATACAGC
  TCAGCCTCTT GAGAGGGGCT GATTAATGAA TAGTCAGGGG GAGTGGTCTA AGCTTCCACA
  GGCCTGGCTA TCATTTCTCA ACATGGACAA AGTCAAGAGA GGATGATAGT TGACTTGTGT
  GTCTCTAATA ACCGAGGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61653832	NES17604426	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50732235					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61653832	NES17604426	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:79040958 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D12Mit4	DNA segment, Chr 12, Massachusetts Institute of Technology 4			594 bp distal
Rr387477	regulatory region 387477			1956 bp upstream
Tmem229b	transmembrane protein 229B			Intron
				Noncoding-Transcript-Variant